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bbduk trimmer plugin  (Biomatters Ltd)

 
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    Biomatters Ltd bbduk trimmer plugin
    Bbduk Trimmer Plugin, supplied by Biomatters Ltd, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/bbduk+plugin/bbduk+plugin+trimmer/10__1016_slash_j__virol__2026__110864-73-9-19
    Average 86 stars, based on 1 article reviews
    bbduk trimmer plugin - by Bioz Stars, 2026-10
    86/100 stars

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    other:

    Article Title: Divergence at mitochondrial and ribosomal loci indicates the split between Asian and European populations of Trichinella spiralis occurred prior to swine domestication.
    Article Snippet: The resulting paired-end reads were trimmed to have no bases lower than Q20 and no more than 2 bases with Q-scores lower than Q30 using the BBDuk plugin in Geneious v.11.1.5 (BioMatters Inc., New Zealand) prior to assembly.

    Article Title: Evaluation of library preparation methods for Illumina next generation sequencing of small amounts of DNA from foodborne parasites.
    Article Snippet: Illumina library preparation methods for ultra-low input amounts were compared using genomic DNA from two foodborne parasites (Angiostrongylus cantonensis and Cyclospora cayetanensis) as examples.. The Ovation Ultralow method resulted in libraries with the highest concentration and produced quality sequencing data, even when the input DNA was in the picogram range.

    Article Title: Pathologic Description and Genetic Characterisation of Kudoa thunni From Yellowfin Tuna (Thunnus albacares) in the Caribbean Sea.
    Article Snippet: Adapter and quality trimming were performed in Geneious Prime (version 2024.1.1; Biomatters Ltd., Auckland, New Zealand) using the BBduk plugin with the following parameters: removal of all TruSeq, Nextera, and PhiX adapters (158 sequences total) from the right end using a k- mer length of 23 with a maximum of one substitution and one substitution plus INDEL; partial adapters were trimmed from ends using a k- mer length of 11.



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